Problem:

I recently decided to do some performance monitoring for my BizTalk servers. While adding performance counters, I notices that one of my systems did not have the BizTalk performance counters listed. All of the BizTalk:*counters were missing.

Solution:

• unlodctr "BTSSvc.3.0"
• lodctr BTSPerfMonExt.ini

Notes:

• I located this solution on MSDN.
• On the BizTalk360 site, they mention that if the above doesn't work to execute lodctr /r.
• Here is the Microsoft reference for lodctr.